PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G18600.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 843aa    MW: 91349.6 Da    PI: 6.4347
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G18600.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.3e-06461483225
                      -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                      k ++C ++ar G C  Gd C++ H
  OMERI01G18600.3 461 KSKPCTHYAR-GSCLKGDDCPYDH 483
                      6789******.************* PP

2zf-CCCH30.85e-10489510526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f+++G C +Gd+CkF+H+
  OMERI01G18600.3 489 PCHNFMENGMCIRGDKCKFSHV 510
                      7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.967430457IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5431455IPR000571Zinc finger, CCCH-type
SMARTSM003560.079431456IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4458484IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5459485IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187459486IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5461484IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018487511IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6488511IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-7489510IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4489509IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.277489512IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MEELSPPIPP AAAPATLAAA PPTTDVLSRR RAHLDSASYR ALSRLFSHCL HLHPPRHAAC  60
PDAEVETAAA AIPPGVSGGL PHVVSPPPAD VGADRGKNLE VEVALGNPTP HETPSTSASP  120
DAAVNPTTDP GVVPQGTEEG RVAGVERVEG LEEVVFAGGT SGEADADGDE LGAGAGLMGD  180
DEALRSMQAC LDGEDSELVI EMVGNDDEQL QLDAMMNNLS GLIDDASACV MSAQSCGVSG  240
DKLQSDDRVA EEVKELGAGI GNDRSVCSLD HGSLDGGGGG FEEGEIEGDT QNLDADDSGN  300
SELQDDVELE EDFDSGRIEE DGSCGHDVKS NLHLIPQKGN GDTARNMLCN SKGDSQMHVA  360
RAQAVSYDEV LDWNETPLPD DKALKHGNTR KRTLTEERKA KKTKTKRIKR ALQREAEGVK  420
RLKLQPVIKP KVVKVCHFYL HGKCQQGNLC KFSHDTTPLT KSKPCTHYAR GSCLKGDDCP  480
YDHELSKYPC HNFMENGMCI RGDKCKFSHV IPTAEGPSTP DAKKSNASSV PEKANCQEQT  540
SRQKTSTVYS GEPATSVPIK HHSILKNLAG ISENAQKVPV RIPRGIQFLP FNKARPDSSI  600
LHQDVVSTEK HKNPTGGPHQ NFGRPQPADG KKLGKHNGHR SAPLLDEKDS SKQANLHPCS  660
EPKKNSLPTT AAVPSSVSTQ HEVSEASRIL QEFLFELGAN IYCQILKIGN YQMNALLFNP  720
QKKAHKDYQA QRLYRWLLHC CPRATRWLGV AQAYNSKSQF LIFISLQQQE ANSAAKGSMP  780
VCIHQLMSSL CHHISLQFVF FSKFQIHVIN RQEIICLFHQ SSSMVSSEMA SSFLRQKLYS  840
IAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622402.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_015622403.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A0E0C3R00.0A0A0E0C3R0_9ORYZ; Uncharacterized protein
STRINGORGLA01G0166700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.22e-06C3H family protein